All networks are available as gzipped, tab-delimited text files. The file format is as follows:

Top Edges: the network is filtered to only include edges with evidence supporting a tissue-specific functional interaction

    [entrez gene id 1][entrez gene id 2][posterior prob.]

Full Network: the network is fully connected

    [entrez gene id 1][entrez gene id 2][posterior prob., with known edges set to 1][posterior prob.]

Gold Standard: each text file (e.g. kidney.dat) contains edges with values 1 through 4 corresponding to C1 - C4 described in our paper. C1 edges are used as positives and C2-C4 are used as negatives to train the tissue-specific models.

Note: These downloadable networks assume a prior probability of 0.1 to match the displayed networks